This directory is set up to run TGCI1 on the promoter data.   The output
file is promoters.data.new which contains the promoter data described
using the original 57 features plus 15 new features.   This new data
can then be used by any standard learning algorithm.   We used C4.5 in
our experiments.

Thanks to Jude Shavlik's group for creating the original domain.

The files in this directory are:

   README - this file

   tgci1-run - shellscript for running tgci1.   

   footer, header, tgci1-input - used internally by tgci1-run shellscript.

   promoters.data.orig - original promoters data

   promoters.data.new - data produced by tgci1-run

   promoters.names.new - names file for C4.5

   tgci1.lisp - lisp code for tgci1

   theory.lisp - promoter theory in a format readable by tgci1.lisp

NOTES:
   1. To run tgci1, run the tgci1-run shellscript without any arguements.
   2. In tgci1-run, you will probably need to substitute in your version
	of LISP where I have lisp4.1 (and recompile).

